Riken Mouse Encyclopedia Archive

Search clone by RIKEN cloneid or accession.
Mouse encyclopedia sequence data archive.
fantom.gz (Update: Sep 12 2005 )

mouse.cDNA.5end.gz (Update: Sep 12 2005 )
Mouse full-length cDNA 5'-end sequences.
mouse.cDNA.5end.uniq.gz (Update: Sep 12 2005 )
Mouse full-length cDNA 5'-end sequences. Non-redundant (clustered by our clustering method) and after removal of the primer adapter and the homopolymeric tail sequences.

mouse.cDNA.3end.gz (Update: Sep 12 2005 )
Mouse full-length cDNA 3'-end sequences.
mouse.cDNA.3end.uniq.gz (Update: Sep 12 2005 )
Mouse full-length cDNA 3'-end sequences. Non-redundant (clustered by our clustering method) and removed poly-A tail.

FANTOM Annotation data files
rikendef.txt.gz
tab-delimited text file of riken definition. Each line consists of clone ID (cloneid), riken definition (anntext), data source (datasrc), and evidence code (evidence).
anndata.txt.gz
tab-delimited text file of all_qualifiers. Each line consists of clone ID (cloneid), qualifier of annotation (qualifier), annotation text (anntext), data souce (datasrc), and evidence code(evidence)

MaXML (Mouse annotation XML) files
MaXML is a specification to exchange FANTOM data in XML.

 
allseq.xml.gz(All sequences in one XML instance)
allseq.sep.xml.gz(All sequences in multiple XML instance)
repseq.xml.gz(Representative sequences in one XML instance)
repseq.sep.xml.gz(Representative sequences in multiple XML instance)

All data files are subject to change without notice.